DCEG Publications Search Results


You searched the DCEG database for: (matches in all fields)

  • Author(s): vogtmann e

Results found: 41


Authors:Loftfield E,  Herzig KH,  Caporaso JG,  Derkach A,  Wan Y,  Byrd DA,  Vogtmann E,  Männikkö M,  Karhunen V,  Knight R,  Gunter MJ,  Jӓrvelin MR,  Sinha R
Title:Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort.
Journal: Cancer Epidemiol Biomarkers Prev
Date:2020 Aug 27
Branches:CGR, MEB
PubMed ID:32855266
PMC ID: not available

Authors:Byrd DA,  Carson TL,  Williams F,  Vogtmann E
Title:Elucidating the role of the gastrointestinal microbiota in racial and ethnic health disparities.
Journal: Genome Biol 21(1):192
Date:2020 Aug 3
Branches:MEB
PubMed ID:32746938
PMC ID: PMC7397581

Authors:Huybrechts I,  Zouiouich S,  Loobuyck A,  Vandenbulcke Z,  Vogtmann E,  Pisanu S,  Iguacel I,  Scalbert A,  Indave I,  Smelov V,  Gunter MJ,  Michels N
Title:The human microbiome in relation to cancer risk: a systematic review of epidemiological studies.
Journal: Cancer Epidemiol Biomarkers Prev
Date:2020 Jul 29
Branches:MEB
PubMed ID:32727720
PMC ID: not available

Authors:Jia M,  Wu Z,  Vogtmann E,  O'Brien KM,  Weinberg CR,  Sandler DP,  Gierach GL
Title:The association between periodontal disease and breast cancer in a prospective cohort study.
Journal: Cancer Prev Res (Phila)
Date:2020 Jul 29
Branches:ITEB, MEB
PubMed ID:32727823
PMC ID: not available

Authors:Yano Y,  Hua X,  Wan Y,  Suman S,  Zhu B,  Dagnall CL,  Hutchinson A,  Jones K,  Hicks BD,  Shi J,  Abnet CC,  Vogtmann E
Title:Comparison of Oral Microbiota Collected Using Multiple Methods and Recommendations for New Epidemiologic Studies.
Journal: mSystems 5(4)
Date:2020 Jul 7
Branches:BB, CGR, MEB
PubMed ID:32636335
PMC ID: PMC7343307

Authors:Byrd DA,  Sinha R,  Hoffman KL,  Chen J,  Hua X,  Shi J,  Chia N,  Petrosino J,  Vogtmann E
Title:Comparison of Methods To Collect Fecal Samples for Microbiome Studies Using Whole-Genome Shotgun Metagenomic Sequencing.
Journal: mSphere 5(1)
Date:2020 Feb 26
Branches:BB, MEB
PubMed ID:32250964
PMC ID: PMC7045388

Authors:Kim M,  Vogtmann E,  Ahlquist DA,  Devens ME,  Kisiel JB,  Taylor WR,  White BA,  Hale VL,  Sung J,  Chia N,  Sinha R,  Chen J
Title:Fecal Metabolomic Signatures in Colorectal Adenoma Patients Are Associated with Gut Microbiota and Early Events of Colorectal Cancer Pathogenesis.
Journal: mBio 11(1)
Date:2020 Feb 18
Branches:MEB
PubMed ID:32071266
PMC ID: PMC7029137

Authors:Vogtmann E,  Han Y,  Caporaso JG,  Bokulich N,  Mohamadkhani A,  Moayyedkazemi A,  Hua X,  Kamangar F,  Wan Y,  Suman S,  Zhu B,  Hutchinson A,  Dagnall C,  Jones K,  Hicks B,  Shi J,  Malekzadeh R,  Abnet CC,  Pourshams A
Title:Oral microbial community composition is associated with pancreatic cancer: A case-control study in Iran.
Journal: Cancer Med 9(2):797-806
Date:2020 Jan
Branches:BB, CGR, MEB
PubMed ID:31750624
PMC ID: PMC6970053

Authors:Liu AQ,  Vogtmann E,  Shao DT,  Abnet CC,  Dou HY,  Qin Y,  Su Z,  Wei WQ,  Chen W
Title:A Comparison of Biopsy and Mucosal Swab Specimens for Examining the Microbiota of Upper Gastrointestinal Carcinoma.
Journal: Cancer Epidemiol Biomarkers Prev 28(12):2030-2037
Date:2019 Dec
Branches:MEB
PubMed ID:31519703
PMC ID: PMC7294753

Authors:Byrd DA,  Chen J,  Vogtmann E,  Hullings A,  Song SJ,  Amir A,  Kibriya MG,  Ahsan H,  Chen Y,  Nelson H,  Knight R,  Shi J,  Chia N,  Sinha R
Title:Reproducibility, stability, and accuracy of microbial profiles by fecal sample collection method in three distinct populations.
Journal: PLoS One 14(11):e0224757
Date:2019
Branches:BB, MEB
PubMed ID:31738775
PMC ID: PMC6860998

Authors:Shao D,  Vogtmann E,  Liu A,  Qin J,  Chen W,  Abnet CC,  Wei W
Title:Microbial characterization of esophageal squamous cell carcinoma and gastric cardia adenocarcinoma from a high-risk region of China.
Journal: Cancer 125(22):3993-4002
Date:2019 Nov 15
Branches:MEB
PubMed ID:31355925
PMC ID: PMC7285383

Authors:Greathouse KL,  Sinha R,  Vogtmann E
Title:DNA extraction for human microbiome studies: the issue of standardization.
Journal: Genome Biol 20(1):212
Date:2019 Oct 21
Branches:MEB
PubMed ID:31639026
PMC ID: PMC6802309

Authors:Bolyen E,  Rideout JR,  Dillon MR,  Bokulich NA,  Abnet CC,  Al-Ghalith GA,  Alexander H,  Alm EJ,  Arumugam M,  Asnicar F,  Bai Y,  Bisanz JE,  Bittinger K,  Brejnrod A,  Brislawn CJ,  Brown CT,  Callahan BJ,  Caraballo-Rodríguez AM,  Chase J,  Cope EK,  Da Silva R,  Diener C,  Dorrestein PC,  Douglas GM,  Durall DM,  Duvallet C,  Edwardson CF,  Ernst M,  Estaki M,  Fouquier J,  Gauglitz JM,  Gibbons SM,  Gibson DL,  Gonzalez A,  Gorlick K,  Guo J,  Hillmann B,  Holmes S,  Holste H,  Huttenhower C,  Huttley GA,  Janssen S,  Jarmusch AK,  Jiang L,  Kaehler BD,  Kang KB,  Keefe CR,  Keim P,  Kelley ST,  Knights D,  Koester I,  Kosciolek T,  Kreps J,  Langille MGI,  Lee J,  Ley R,  Liu YX,  Loftfield E,  Lozupone C,  Maher M,  Marotz C,  Martin BD,  McDonald D,  McIver LJ,  Melnik AV,  Metcalf JL,  Morgan SC,  Morton JT,  Naimey AT,  Navas-Molina JA,  Nothias LF,  Orchanian SB,  Pearson T,  Peoples SL,  Petras D,  Preuss ML,  Pruesse E,  Rasmussen LB,  Rivers A,  Robeson MS 2nd,  Rosenthal P,  Segata N,  Shaffer M,  Shiffer A,  Sinha R,  Song SJ,  Spear JR,  Swafford AD,  Thompson LR,  Torres PJ,  Trinh P,  Tripathi A,  Turnbaugh PJ,  Ul-Hasan S,  van der Hooft JJJ,  Vargas F,  Vázquez-Baeza Y,  Vogtmann E,  von Hippel M,  Walters W,  Wan Y,  Wang M,  Warren J,  Weber KC,  Williamson CHD,  Willis AD,  Xu ZZ,  Zaneveld JR,  Zhang Y,  Zhu Q,  Knight R,  Caporaso JG
Title:Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Journal: Nat Biotechnol 37(9):1091
Date:2019 Sep
Branches:BB, MEB
PubMed ID:31399723
PMC ID: not available

Authors:Bolyen E,  Rideout JR,  Dillon MR,  Bokulich NA,  Abnet CC,  Al-Ghalith GA,  Alexander H,  Alm EJ,  Arumugam M,  Asnicar F,  Bai Y,  Bisanz JE,  Bittinger K,  Brejnrod A,  Brislawn CJ,  Brown CT,  Callahan BJ,  Caraballo-Rodríguez AM,  Chase J,  Cope EK,  Da Silva R,  Diener C,  Dorrestein PC,  Douglas GM,  Durall DM,  Duvallet C,  Edwardson CF,  Ernst M,  Estaki M,  Fouquier J,  Gauglitz JM,  Gibbons SM,  Gibson DL,  Gonzalez A,  Gorlick K,  Guo J,  Hillmann B,  Holmes S,  Holste H,  Huttenhower C,  Huttley GA,  Janssen S,  Jarmusch AK,  Jiang L,  Kaehler BD,  Kang KB,  Keefe CR,  Keim P,  Kelley ST,  Knights D,  Koester I,  Kosciolek T,  Kreps J,  Langille MGI,  Lee J,  Ley R,  Liu YX,  Loftfield E,  Lozupone C,  Maher M,  Marotz C,  Martin BD,  McDonald D,  McIver LJ,  Melnik AV,  Metcalf JL,  Morgan SC,  Morton JT,  Naimey AT,  Navas-Molina JA,  Nothias LF,  Orchanian SB,  Pearson T,  Peoples SL,  Petras D,  Preuss ML,  Pruesse E,  Rasmussen LB,  Rivers A,  Robeson MS 2nd,  Rosenthal P,  Segata N,  Shaffer M,  Shiffer A,  Sinha R,  Song SJ,  Spear JR,  Swafford AD,  Thompson LR,  Torres PJ,  Trinh P,  Tripathi A,  Turnbaugh PJ,  Ul-Hasan S,  van der Hooft JJJ,  Vargas F,  Vázquez-Baeza Y,  Vogtmann E,  von Hippel M,  Walters W,  Wan Y,  Wang M,  Warren J,  Weber KC,  Williamson CHD,  Willis AD,  Xu ZZ,  Zaneveld JR,  Zhang Y,  Zhu Q,  Knight R,  Caporaso JG
Title:Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Journal: Nat Biotechnol 37(8):852-857
Date:2019 Aug
Branches:BB, MEB
PubMed ID:31341288
PMC ID: PMC7015180

Authors:Zeng Q,  Vogtmann E,  Jia MM,  Parascandola M,  Li JB,  Wu YL,  Feng QF,  Zou XN
Title:Tobacco smoking and trends in histological subtypes of female lung cancer at the Cancer Hospital of the Chinese Academy of Medical Sciences over 13 years.
Journal: Thorac Cancer 10(8):1717-1724
Date:2019 Aug
Branches:MEB
PubMed ID:31293059
PMC ID: PMC6669800

Authors:Wirbel J,  Pyl PT,  Kartal E,  Zych K,  Kashani A,  Milanese A,  Fleck JS,  Voigt AY,  Palleja A,  Ponnudurai R,  Sunagawa S,  Coelho LP,  Schrotz-King P,  Vogtmann E,  Habermann N,  Niméus E,  Thomas AM,  Manghi P,  Gandini S,  Serrano D,  Mizutani S,  Shiroma H,  Shiba S,  Shibata T,  Yachida S,  Yamada T,  Waldron L,  Naccarati A,  Segata N,  Sinha R,  Ulrich CM,  Brenner H,  Arumugam M,  Bork P,  Zeller G
Title:Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer.
Journal: Nat Med 25(4):679-689
Date:2019 Apr
Branches:MEB
PubMed ID:30936547
PMC ID: not available

Authors:Vogtmann E,  Chen J,  Kibriya MG,  Amir A,  Shi J,  Chen Y,  Islam T,  Eunes M,  Ahmed A,  Naher J,  Rahman A,  Barmon B,  Knight R,  Chia N,  Ahsan H,  Abnet CC,  Sinha R
Title:Comparison of Oral Collection Methods for Studies of Microbiota.
Journal: Cancer Epidemiol Biomarkers Prev 28(1):137-143
Date:2019 Jan
Branches:BB, MEB
PubMed ID:30262598
PMC ID: PMC6324947

Authors:Sinha R,  Ahsan H,  Blaser M,  Caporaso JG,  Carmical JR,  Chan AT,  Fodor A,  Gail MH,  Harris CC,  Helzlsouer K,  Huttenhower C,  Knight R,  Kong HH,  Lai GY,  Hutchinson DLS,  Le Marchand L,  Li H,  Orlich MJ,  Shi J,  Truelove A,  Verma M,  Vogtmann E,  White O,  Willett W,  Zheng W,  Mahabir S,  Abnet C
Title:Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16-17, 2017.
Journal: Microbiome 6(1):210
Date:2018 Nov 26
Branches:BB, MEB
PubMed ID:30477563
PMC ID: PMC6257978

Authors:Sinha R,  Goedert JJ,  Vogtmann E,  Hua X,  Porras C,  Hayes R,  Safaeian M,  Yu G,  Sampson J,  Ahn J,  Shi J
Title:Quantification of Human Microbiome Stability Over 6 Months: Implications for Epidemiologic Studies.
Journal: Am J Epidemiol 187(6):1282-1290
Date:2018 Jun 1
Branches:BB, IIB, ITEB, MEB, OEEB
PubMed ID:29608646
PMC ID: PMC5982812

Authors:Vogtmann E,  Hua X,  Zhou L,  Wan Y,  Suman S,  Zhu B,  Dagnall CL,  Hutchinson A,  Jones K,  Hicks BD,  Sinha R,  Shi J,  Abnet CC
Title:Temporal Variability of Oral Microbiota over 10 Months and the Implications for Future Epidemiologic Studies.
Journal: Cancer Epidemiol Biomarkers Prev 27(5):594-600
Date:2018 May
Branches:BB, CGR, MEB
PubMed ID:29475969
PMC ID: PMC5932224

Authors:Vogtmann E,  Etemadi A,  Kamangar F,  Islami F,  Roshandel G,  Poustchi H,  Pourshams A,  Khoshnia M,  Gharravi A,  Brennan PJ,  Boffetta P,  Dawsey SM,  Malekzadeh R,  Abnet CC
Title:Oral health and mortality in the Golestan Cohort Study.
Journal: Int J Epidemiol 46(6):2028-2035
Date:2017 Dec 1
Branches:MEB
PubMed ID:28449082
PMC ID: PMC5837566

Authors:White AJ,  Weinberg CR,  Park YM,  D'Aloisio AA,  Vogtmann E,  Nichols HB,  Sandler DP
Title:Sleep characteristics, light at night and breast cancer risk in a prospective cohort.
Journal: Int J Cancer 141(11):2204-2214
Date:2017 Dec 1
Branches:MEB
PubMed ID:28791684
PMC ID: PMC5633507

Authors:Sinha R,  Abu-Ali G,  Vogtmann E,  Fodor AA,  Ren B,  Amir A,  Schwager E,  Crabtree J,  Ma S,  Microbiome Quality Control Project Consortium,  Abnet CC,  Knight R,  White O,  Huttenhower C
Title:Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium.
Journal: Nat Biotechnol 35(11):1077-1086
Date:2017 Nov
Branches:MEB
PubMed ID:28967885
PMC ID: PMC5839636

Authors:Choi K,  Sabado M,  El-Toukhy S,  Vogtmann E,  Freedman ND,  Hatsukami D
Title:Tobacco Product Use Patterns, and Nicotine and Tobacco-Specific Nitrosamine Exposure: NHANES 1999-2012.
Journal: Cancer Epidemiol Biomarkers Prev 26(10):1525-1530
Date:2017 Oct
Branches:MEB
PubMed ID:28710077
PMC ID: PMC5626596

Authors:Murphy G,  Abnet CC,  Choo-Wosoba H,  Vogtmann E,  Weinstein SJ,  Taylor PR,  Männistö S,  Albanes D,  Dawsey SM,  Rehfeld JF,  Freedman ND
Title:Serum gastrin and cholecystokinin are associated with subsequent development of gastric cancer in a prospective cohort of Finnish smokers.
Journal: Int J Epidemiol 46(3):914-923
Date:2017 Jun 1
Branches:BB, MEB
PubMed ID:28369403
PMC ID: PMC5837256

Authors:Vogtmann E,  Chen J,  Kibriya MG,  Chen Y,  Islam T,  Eunes M,  Ahmed A,  Naher J,  Rahman A,  Amir A,  Shi J,  Abnet CC,  Nelson H,  Knight R,  Chia N,  Ahsan H,  Sinha R
Title:Comparison of Fecal Collection Methods for Microbiota Studies in Bangladesh.
Journal: Appl Environ Microbiol 83(10)
Date:2017 May 15
Branches:BB, MEB, OEEB
PubMed ID:28258145
PMC ID: PMC5411505

Authors:Vogtmann E,  Corley DA,  Almers LM,  Cardwell CR,  Murray LJ,  Abnet CC
Title:Oral bisphosphonates and colorectal cancer.
Journal: Sci Rep 7:44177
Date:2017 Mar 10
Branches:MEB
PubMed ID:28281559
PMC ID: PMC5345000

Authors:Vogtmann E,  Graubard B,  Loftfield E,  Chaturvedi A,  Dye BA,  Abnet CC,  Freedman ND
Title:Contemporary impact of tobacco use on periodontal disease in the USA.
Journal: Tob Control 26(2):237-238
Date:2017 Mar
Branches:BB, IIB, MEB
PubMed ID:26880744
PMC ID: PMC5448281

Authors:Vogtmann E,  Chen J,  Amir A,  Shi J,  Abnet CC,  Nelson H,  Knight R,  Chia N,  Sinha R
Title:Comparison of Collection Methods for Fecal Samples in Microbiome Studies.
Journal: Am J Epidemiol 185(2):115-123
Date:2017 Jan 15
Branches:BB, MEB
PubMed ID:27986704
PMC ID: PMC5253972

Authors:Loftfield E,  Vogtmann E,  Sampson JN,  Moore SC,  Nelson H,  Knight R,  Chia N,  Sinha R
Title:Comparison of Collection Methods for Fecal Samples for Discovery Metabolomics in Epidemiologic Studies.
Journal: Cancer Epidemiol Biomarkers Prev 25(11):1483-1490
Date:2016 Nov
Branches:BB, MEB
PubMed ID:27543620
PMC ID: PMC5093035

Authors:Loftfield E,  Freedman ND,  Dodd KW,  Vogtmann E,  Xiao Q,  Sinha R,  Graubard BI
Title:Coffee Drinking Is Widespread in the United States, but Usual Intake Varies by Key Demographic and Lifestyle Factors.
Journal: J Nutr 146(9):1762-8
Date:2016 Sep
Branches:BB, MEB
PubMed ID:27489008
PMC ID: PMC4997286

Authors:Vogtmann E,  Hua X,  Zeller G,  Sunagawa S,  Voigt AY,  Hercog R,  Goedert JJ,  Shi J,  Bork P,  Sinha R
Title:Colorectal Cancer and the Human Gut Microbiome: Reproducibility with Whole-Genome Shotgun Sequencing.
Journal: PLoS One 11(5):e0155362
Date:2016
Branches:BB, IIB, MEB
PubMed ID:27171425
PMC ID: PMC4865240

Authors:Sinha R,  Vogtmann E,  Chen J,  Amir A,  Shi J,  Sampson J,  Flores R,  Knight R,  Chia N
Title:Fecal Microbiome in Epidemiologic Studies-Response.
Journal: Cancer Epidemiol Biomarkers Prev 25(5):870-1
Date:2016 May
Branches:BB, IIB, MEB
PubMed ID:26961994
PMC ID: PMC4873434

Authors:Vogtmann E,  Goedert JJ
Title:Epidemiologic studies of the human microbiome and cancer.
Journal: Br J Cancer 114(3):237-42
Date:2016 Feb 2
Branches:IIB, MEB
PubMed ID:26730578
PMC ID: PMC4742587

Authors:Sinha R,  Chen J,  Amir A,  Vogtmann E,  Shi J,  Inman KS,  Flores R,  Sampson J,  Knight R,  Chia N
Title:Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies.
Journal: Cancer Epidemiol Biomarkers Prev 25(2):407-16
Date:2016 Feb
Branches:BB, IIB, MEB
PubMed ID:26604270
PMC ID: PMC4821594

Authors:Vogtmann E,  Corley DA,  Almers LM,  Cardwell CR,  Murray LJ,  Abnet CC
Title:Oral Bisphosphonate Exposure and the Risk of Upper Gastrointestinal Cancers.
Journal: PLoS One 10(10):e0140180
Date:2015
Branches:MEB
PubMed ID:26445463
PMC ID: PMC4596624

Authors:Lin SW,  Freedman ND,  Shi J,  Gail MH,  Vogtmann E,  Yu G,  Klepac-Ceraj V,  Paster BJ,  Dye BA,  Wang GQ,  Wei WQ,  Fan JH,  Qiao YL,  Dawsey SM,  Abnet CC
Title:Beta-diversity metrics of the upper digestive tract microbiome are associated with body mass index.
Journal: Obesity (Silver Spring) 23(4):862-9
Date:2015 Apr
Branches:BB, ITEB, MEB
PubMed ID:25755147
PMC ID: PMC4380747

Authors:Vogtmann E,  Flores R,  Yu G,  Freedman ND,  Shi J,  Gail MH,  Dye BA,  Wang GQ,  Klepac-Ceraj V,  Paster BJ,  Wei WQ,  Guo HQ,  Dawsey SM,  Qiao YL,  Abnet CC
Title:Association between tobacco use and the upper gastrointestinal microbiome among Chinese men.
Journal: Cancer Causes Control 26(4):581-8
Date:2015 Apr
Branches:BB, ITEB, IIB, MEB
PubMed ID:25701246
PMC ID: PMC4852095

Authors:Vogtmann E,  Shu XO,  Li HL,  Chow WH,  Yang G,  Ji BT,  Cai H,  Yu C,  Gao YT,  Zheng W,  Xiang YB
Title:Cholelithiasis and the risk of liver cancer: results from cohort studies of 134,546 Chinese men and women.
Journal: J Epidemiol Community Health 68(6):565-70
Date:2014 Jun
Branches:MEB, OEEB
PubMed ID:24574318
PMC ID: PMC4140434

Authors:Wu QJ,  Xie L,  Zheng W,  Vogtmann E,  Li HL,  Yang G,  Ji BT,  Gao YT,  Shu XO,  Xiang YB
Title:Cruciferous vegetables consumption and the risk of female lung cancer: a prospective study and a meta-analysis.
Journal: Ann Oncol 24(7):1918-24
Date:2013 Jul
Branches:MEB, OEEB
PubMed ID:23553059
PMC ID: PMC3690909

Authors:Vogtmann E,  Li HL,  Shu XO,  Chow WH,  Ji BT,  Cai H,  Gao J,  Zhang W,  Gao YT,  Zheng W,  Xiang YB
Title:Dietary glycemic load, glycemic index, and carbohydrates on the risk of primary liver cancer among Chinese women and men.
Journal: Ann Oncol 24(1):238-44
Date:2013 Jan
Branches:OEEB
PubMed ID:22898034
PMC ID: PMC3525137