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Title: Expanding the genetic architecture of nicotine dependence and its shared genetics with multiple traits.
Authors: Quach BC,  Bray MJ,  Gaddis NC,  Liu M,  Palviainen T,  Minica CC,  Zellers S,  Sherva R,  Aliev F,  Nothnagel M,  Young KA,  Marks JA,  Young H,  Carnes MU,  Guo Y,  Waldrop A,  Sey NYA,  Landi MT,  McNeil DW,  Drichel D,  Farrer LA,  Markunas CA,  Vink JM,  Hottenga JJ,  Iacono WG,  Kranzler HR,  Saccone NL,  Neale MC,  Madden P,  Rietschel M,  Marazita ML,  McGue M,  Won H,  Winterer G,  Grucza R,  Dick DM,  Gelernter J,  Caporaso NE,  Baker TB,  Boomsma DI,  Kaprio J,  Hokanson JE,  Vrieze S,  Bierut LJ,  Johnson EO,  Hancock DB
Journal: Nat Commun
Date: 2020 Nov 3
Branches: ITEB, OD
PubMed ID: 33144568
PMC ID: PMC7642344
Abstract: Cigarette smoking is the leading cause of preventable morbidity and mortality. Genetic variation contributes to initiation, regular smoking, nicotine dependence, and cessation. We present a Fagerström Test for Nicotine Dependence (FTND)-based genome-wide association study in 58,000 European or African ancestry smokers. We observe five genome-wide significant loci, including previously unreported loci MAGI2/GNAI1 (rs2714700) and TENM2 (rs1862416), and extend loci reported for other smoking traits to nicotine dependence. Using the heaviness of smoking index from UK Biobank (N = 33,791), rs2714700 is consistently associated; rs1862416 is not associated, likely reflecting nicotine dependence features not captured by the heaviness of smoking index. Both variants influence nearby gene expression (rs2714700/MAGI2-AS3 in hippocampus; rs1862416/TENM2 in lung), and expression of genes spanning nicotine dependence-associated variants is enriched in cerebellum. Nicotine dependence (SNP-based heritability = 8.6%) is genetically correlated with 18 other smoking traits (rg = 0.40-1.09) and co-morbidities. Our results highlight nicotine dependence-specific loci, emphasizing the FTND as a composite phenotype that expands genetic knowledge of smoking.