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Title: A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33.
Authors: Petersen GM,  Amundadottir L,  Fuchs CS,  Kraft P,  Stolzenberg-Solomon RZ,  Jacobs KB,  Arslan AA,  Bueno-de-Mesquita HB,  Gallinger S,  Gross M,  Helzlsouer K,  Holly EA,  Jacobs EJ,  Klein AP,  LaCroix A,  Li D,  Mandelson MT,  Olson SH,  Risch HA,  Zheng W,  Albanes D,  Bamlet WR,  Berg CD,  Boutron-Ruault MC,  Buring JE,  Bracci PM,  Canzian F,  Clipp S,  Cotterchio M,  de Andrade M,  Duell EJ,  Gaziano JM,  Giovannucci EL,  Goggins M,  Hallmans G,  Hankinson SE,  Hassan M,  Howard B,  Hunter DJ,  Hutchinson A,  Jenab M,  Kaaks R,  Kooperberg C,  Krogh V,  Kurtz RC,  Lynch SM,  McWilliams RR,  Mendelsohn JB,  Michaud DS,  Parikh H,  Patel AV,  Peeters PH,  Rajkovic A,  Riboli E,  Rodriguez L,  Seminara D,  Shu XO,  Thomas G,  Tjønneland A,  Tobias GS,  Trichopoulos D,  Van Den Eeden SK,  Virtamo J,  Wactawski-Wende J,  Wang Z,  Wolpin BM,  Yu H,  Yu K,  Zeleniuch-Jacquotte A,  Fraumeni JF Jr,  Hoover RN,  Hartge P,  Chanock SJ
Journal: Nat Genet
Date: 2010 Mar
Branches: BB, CGR, EBP, HGP, LTG, NEB, OD
PubMed ID: 20101243
PMC ID: PMC2853179
Abstract: We conducted a genome-wide association study of pancreatic cancer in 3,851 affected individuals (cases) and 3,934 unaffected controls drawn from 12 prospective cohort studies and 8 case-control studies. Based on a logistic regression model for genotype trend effect that was adjusted for study, age, sex, self-described ancestry and five principal components, we identified eight SNPs that map to three loci on chromosomes 13q22.1, 1q32.1 and 5p15.33. Two correlated SNPs, rs9543325 (P = 3.27 x 10(-11), per-allele odds ratio (OR) 1.26, 95% CI 1.18-1.35) and rs9564966 (P = 5.86 x 10(-8), per-allele OR 1.21, 95% CI 1.13-1.30), map to a nongenic region on chromosome 13q22.1. Five SNPs on 1q32.1 map to NR5A2, and the strongest signal was at rs3790844 (P = 2.45 x 10(-10), per-allele OR 0.77, 95% CI 0.71-0.84). A single SNP, rs401681 (P = 3.66 x 10(-7), per-allele OR 1.19, 95% CI 1.11-1.27), maps to the CLPTM1L-TERT locus on 5p15.33, which is associated with multiple cancers. Our study has identified common susceptibility loci for pancreatic cancer that warrant follow-up studies.