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Title: The 5p15.33 locus is associated with risk of lung adenocarcinoma in never-smoking females in Asia.
Authors: Hsiung CA,  Lan Q,  Hong YC,  Chen CJ,  Hosgood HD,  Chang IS,  Chatterjee N,  Brennan P,  Wu C,  Zheng W,  Chang GC,  Wu T,  Park JY,  Hsiao CF,  Kim YH,  Shen H,  Seow A,  Yeager M,  Tsai YH,  Kim YT,  Chow WH,  Guo H,  Wang WC,  Sung SW,  Hu Z,  Chen KY,  Kim JH,  Chen Y,  Huang L,  Lee KM,  Lo YL,  Gao YT,  Kim JH,  Liu L,  Huang MS,  Jung TH,  Jin G,  Caporaso N,  Yu D,  Kim CH,  Su WC,  Shu XO,  Xu P,  Kim IS,  Chen YM,  Ma H,  Shen M,  Cha SI,  Tan W,  Chang CH,  Sung JS,  Zhang M,  Yang TY,  Park KH,  Yuenger J,  Wang CL,  Ryu JS,  Xiang Y,  Deng Q,  Hutchinson A,  Kim JS,  Cai Q,  Landi MT,  Yu CJ,  Park JY,  Tucker M,  Hung JY,  Lin CC,  Perng RP,  Boffetta P,  Chen CY,  Chen KC,  Yang SY,  Hu CY,  Chang CK,  Fraumeni JF,  Chanock S,  Yang PC,  Rothman N,  Lin D
Journal: PLoS Genet
Date: 2010 Aug
Branches: BB, CGR, GEB, HGP, LTG, OD, OEEB
PubMed ID: 20700438
PMC ID: PMC2916850
Abstract: Genome-wide association studies of lung cancer reported in populations of European background have identified three regions on chromosomes 5p15.33, 6p21.33, and 15q25 that have achieved genome-wide significance with p-values of 10(-7) or lower. These studies have been performed primarily in cigarette smokers, raising the possibility that the observed associations could be related to tobacco use, lung carcinogenesis, or both. Since most women in Asia do not smoke, we conducted a genome-wide association study of lung adenocarcinoma in never-smoking females (584 cases, 585 controls) among Han Chinese in Taiwan and found that the most significant association was for rs2736100 on chromosome 5p15.33 (p = 1.30 x 10(-11)). This finding was independently replicated in seven studies from East Asia totaling 1,164 lung adenocarcinomas and 1,736 controls (p = 5.38 x 10(-11)). A pooled analysis achieved genome-wide significance for rs2736100. This SNP marker localizes to the CLPTM1L-TERT locus on chromosome 5p15.33 (p = 2.60 x 10(-20), allelic risk = 1.54, 95% Confidence Interval (CI) 1.41-1.68). Risks for heterozygote and homozygote carriers of the minor allele were 1.62 (95% CI; 1.40-1.87), and 2.35 (95% CI: 1.95-2.83), respectively. In summary, our results show that genetic variation in the CLPTM1L-TERT locus of chromosome 5p15.33 is directly associated with the risk of lung cancer, most notably adenocarcinoma.