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Title: A subset-based approach improves power and interpretation for the combined analysis of genetic association studies of heterogeneous traits.
Authors: Bhattacharjee S,  Rajaraman P,  Jacobs KB,  Wheeler WA,  Melin BS,  Hartge P,  GliomaScan Consortium,  Yeager M,  Chung CC,  Chanock SJ,  Chatterjee N,  Albanes D,  Andersson U,  Beane-Freeman L,  Berg CD,  Buring JE,  Butler MA,  Carreon T,  Collatz Christensen H,  Feychting M,  Gapstur SM,  Gaziano J,  Giles GG,  Hallmans G,  Hankinson SE,  Henriksson R,  Hoppin J,  Hsing AW,  Inskip PD,  Johansen C,  Kolonel LN,  McKean-Cowdin R,  Michaud D,  Peters U,  Purdue MP,  Ruder AM,  Sesso HD,  Severi G,  Stevens VL,  Visvanathan K,  Wang Z,  White E,  Willett WC,  Zeleniuch-Jacquotte A
Journal: Am J Hum Genet
Date: 2012 May 4
Branches: BB, CGR, EBP, LTG
PubMed ID: 22560090
PMC ID: PMC3376551
Abstract: Pooling genome-wide association studies (GWASs) increases power but also poses methodological challenges because studies are often heterogeneous. For example, combining GWASs of related but distinct traits can provide promising directions for the discovery of loci with small but common pleiotropic effects. Classical approaches for meta-analysis or pooled analysis, however, might not be suitable for such analysis because individual variants are likely to be associated with only a subset of the traits or might demonstrate effects in different directions. We propose a method that exhaustively explores subsets of studies for the presence of true association signals that are in either the same direction or possibly opposite directions. An efficient approximation is used for rapid evaluation of p values. We present two illustrative applications, one for a meta-analysis of separate case-control studies of six distinct cancers and another for pooled analysis of a case-control study of glioma, a class of brain tumors that contains heterogeneous subtypes. Both the applications and additional simulation studies demonstrate that the proposed methods offer improved power and more interpretable results when compared to traditional methods for the analysis of heterogeneous traits. The proposed framework has applications beyond genetic association studies.